SE2630229

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7197
  • Oryza sativa
  • SE2630229
  • hAT
  • Hat71
  • Chr06:1020458-1020692
  • CAGGGGCG
  • CAGGGGCGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
              AC   GGTGCAGGGGGGACTTAAGTCCCCCCTACACCCACAAAACCCATGGATACCCCCCTAAGCCCTCCCTTCAATTTTTTCATCATAGTTGATAAGATAGG
CAGGGGCGGATCCA  GTG                                                                                                  
||||||||||||||  |||                                                                                                  A
GTCCCCGCCTAGGT  TTG                                                                                                  
              CT   TTTTTCAACCCCCCTGAGTTGTATGGCTCATGTAACTATATTTGTGTATTAGAGTCATAATTTGATACGATTTTACGATAATATTCTGGAAATCGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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