SE2630230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7198
  • Oryza sativa
  • SE2630230
  • hAT
  • Hat71
  • Chr06:25664660-25664842
  • CAGGGGCG
  • CAGGGGCGGATCCAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
               G AAAAAA      ---   -----   CAGTTACACAGTTTCTTCAATCTCCAACCATTTAGGGATCTTTAGTTTACCATTC
CAGGGGCGGATCCAG A      ATTGGA   GAG     GCT                                                       
||||||||||||||| |      ||||||   |||     |||                                                        
GTCCCCGCCTAGGTT T      CCCACG   AGG     GTA                                                       
               G -----A      TTC   GGGAT   GGTGTTCTGGATACCTATGGAGACCTTGTGGGGGAAACTAAAAAAAAAAGTGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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