SE2630231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7199
  • Oryza sativa
  • SE2630231
  • hAT
  • Hat71
  • Chr06:23372970-23373162
  • CAGGGGCG
  • CAGGGGCGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
              -----------AC T      AGGGGGGATTCGAGTCCCCTCTACACACCAGACCCATGGATACCCCTGGAGCACCCCTTTCAATTTT
CAGGGGCGGATCCA             G GGGTGC                                                                   
||||||||||||||             | ||||||                                                                   T
GTCCCCGCCTAGGT             T TAACTC                                                                   
              CCTTGTTTTTTTT -      CCCGAGTTAATGTGTCAAAAAAATTTGAGGTCAGTATATCCCTGGAAATCAAATAATAAGTACCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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