Plant MITE

SE2630232

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7200
Oryza sativa
SE2630232
hAT
Hat73
Chr12:3443129-3443430
CAGGGGCG
G

Secondary structure and sequence

TSD TIR

5'

3'

CA   GCGGATCTACCTATTAGGTAGGGTGCGTGGACCGTCCCAGCTATGACCCGTGTCGCCTCACACCCCCAAGACCCTTCCTACCCCTTACAATAGTTATAGGCCATCAAAATTAGGTATAACAAGGTGTGAACGTCCAATATATTAGT
  GGG                                                                                                                                                  
  |||                                                                                                                                                   
  CAC                                                                                                                                                  
GT   CGCCTGTGTCAAAATTTTATATCTACCCCGCCTCTTATTTCTACAAATGAGCTATTCATTAGCTTGTGTTGTGTATAGTATAAATATATAGTTAGCATATGAACAGAGTAATAACAAACACCGCACATACGCAACACTTCTCTGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630232

CAGGGGCGGATCTACCTATTAGGTAGGGTGCGTGGACCGTCCCAGCTATGACCCGTGTCGCCTCACACCCCCAAGACCCTTCCTACCCCTTACAATAGTTATAGGCCATCAAAATTAGGTATAACAAGGTGTGAACGTCCAATATATTAGTCTGTCTCTTCACAACGCATACACGCCACAAACAATAATGAGACAAGTATACGATTGATATATAAATATGATATGTGTTGTGTTCGATTACTTATCGAGTAAACATCTTTATTCTCCGCCCCATCTATATTTTAAAACTGTGTCCGCCACTG

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