Plant MITE

SE2630233

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7201
Oryza sativa
SE2630233
hAT
Hat73
Chr05:4743334-4743595
CAGTGGCG
A

Secondary structure and sequence

TSD TIR

5'

3'

 C   G  GGACGCAGCTTTAAAATATATATGGGGCGGAGAGCGGAGATGTTTACTCGATAAGAGCAATCGAACATAATACATATCGTATTGGTAGTTCATTTGTATAACTGACTTAATTTTTTGGGTGTTC
  AGT GC                                                                                                                            
  ||| ||                                                                                                                             
  CCT CG                                                                                                                            
GT   -  CCTAGATGGGTAATCCGTCCCACCCAGTTGGCTGAGTCGATGCTGAGCACAGTGGGATGTGAGCGTTCTGGGGAATGGGGGAATATCATCAGTACCCGGTAATTTTAATCCATATTGTTTCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630233

CAGTGGCGGACGCAGCTTTAAAATATATATGGGGCGGAGAGCGGAGATGTTTACTCGATAAGAGCAATCGAACATAATACATATCGTATTGGTAGTTCATTTGTATAACTGACTTAATTTTTTGGGTGTTCACACTTTGTTATACCTAATTTTAATGGCCCATGACTACTATAAGGGGGTAAGGGGTCTTGCGAGTGTAGGGTGACACGAGTCGTAGCTGAGTCGGTTGACCCACCCTGCCTAATGGGTAGATCCGCTCCTG

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