SE2630235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7203
  • Oryza sativa
  • SE2630235
  • hAT
  • Hat74
  • Chr04:22044061-22044692
  • TAGGGCTG
  • TAGGGCTGTCAAAAAAGCTCAGAGCTCGCAAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
            AAA    CA       CA   ------      -      --  TC  - ATA GCTTGATTCGAGCTCGGCTCGAATACTAGACGAGCCAAGCTCAAGTCTAGGCTGAGGCTCGCAAGCCTAGCAAGCTCGAGCTCGAATAGCTCGGCAGAGCTTGATTAGCATAAGATGAATTGCATGTAAGAAGATATTCTTGATGGGTCAATGTATACTTGTCATCGTGTTTGGCCTGCCCAAGTCTTAAGACCTCATCAGTGCTTCTCAATAAAGCAATTATCCGGCTGCTAGTAATAGAACTACTATTCCTATTAGAT
TAGGGCTGTCAA   AGCT  GAGCTCG  AGC      TGCTCG AGCTTG  AT  GT T   G                                                                                                                                                                                                                                                                    
||||||||||||   ||||  |||||||  |||      |||||| ||||||  ||  || |   |                                                                                                                                                                                                                                                                     
ATCCCGACAGTT   TCGG  CTCGAGC  TCG      CCGATA ATCCGA  TC  GA C   T                                                                                                                                                                                                                                                                    
            -GC    --       --   CTCAAA      C      AC  --  A --- GTACTTGAGCTCGGCTCGGATCTATAACTAGCTCGAACCCTCACTCGAGCTCAAGCTCGAGCTCGCTCGAAGCTCGGATGAGCTCGAACTGTCGAACTGAACCACTTTGAGGTTTATTGAATGAGAATATATTCTCTATAGTTACGTTTAATAGCCATCAGTTTTAATTACCCACGATGAACAGAACTTACTTCGGAGACGTCGAAAAGAGTACTTAAATACCGAAACTTTGCAACGTTAATTGTTTTCGATCGATGATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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