Plant MITE

SE2630236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7204
Oryza sativa
SE2630236
hAT
Hat74
Chr01:41238316-41238843
TAGGGCTG
TAGGGCTGTCAA

Secondary structure and sequence

TSD TIR

5'

3'

            AAAAGCTC             AGC  GA        -----  TCCTA      A  C      - GCTCGAGCTTCAAACGAGCCGAACCCGAGCCTGAGCAAAAGCTCGCGAGCTTTACCGAGCCGAGCTCGAGCTTTTGCCGAGCCTGGCCGAGCTTGACTATTTATAGTTCATATTGCATGTTCACCTTATTAATATAATAAACTAATAGGTAAATATATATATTAGTATCTATTTACACAATAAATTAGCATGTGTTAGC
TAGGGCTGTCAA        GAGGCTCGCGAGC   TT  GCTTGGCT     CG     GGCTCG TT GAGCTC G                                                                                                                                                                                                       
||||||||||||        |||||||||||||   ||  ||||||||     ||     |||||| || |||||| |                                                                                                                                                                                                        
ATCCCGACAGTT        GCTCGGCTCGAGC   TC  GCTCGAGC     GG     TTCGAG CT CGAGCT T                                                                                                                                                                                                       
            --------             ---  --        AGACG  -----      -  -      G GTTCGAGCTCGGCTCGGATAAGATGGAAGCTCGAAAATCCGTTCGAGCCAAGCTCGAGCAAGCTCGAGCTCGAGCCGATGGCTCGAGCCAGTATTCATCATATTATATATAAAATTACTATTAGAAAACTATTCATATTAATAAAAAATCAATTAGTGTGATTATTTTCTCATCTTTTATTAATTTTATTTATATAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630236

TAGGGCTGTCAAAAAAGCTCGAGGCTCGCGAGCAGCTTGAGCTTGGCTCGTCCTAGGCTCGATTCGAGCTCGGCTCGAGCTTCAAACGAGCCGAACCCGAGCCTGAGCAAAAGCTCGCGAGCTTTACCGAGCCGAGCTCGAGCTTTTGCCGAGCCTGGCCGAGCTTGACTATTTATAGTTCATATTGCATGTTCACCTTATTAATATAATAAACTAATAGGTAAATATATATATTAGTATCTATTTACACAATAAATTAGCATGTGTTAGCATAATATATTTATTTTAATTATTTTCTACTCTTTTATTAGTGTGATTAACTAAAAAATAATTATACTTATCAAAAGATTATCATTAAAATATATATTATACTACTTATGACCGAGCTCGGTAGCCGAGCTCGAGCTCGAACGAGCTCGAACCGAGCTTGCCTAAAAGCTCGAAGGTAGAATAGGCTCGGCTCGAGCTTGTGTCGAGCTCGAGCTTGGGCAGACGAGCTCGCTCGAGCTCGGCTCGTTGACAGCCCTA

Copy Cancel