Plant MITE

SE2630237

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7205
Oryza sativa
SE2630237
hAT
Hat8
Chr10:17236837-17237015
CAGTGGCG
CAGTGGCGGATCCAG

Secondary structure and sequence

TSD TIR

5'

3'

   T        --C  AAAATC   TTGT         AAC   T TAT     T -ATA   TGCTAATTATACTTAGATCATGGTGTTATAG
CAG GGCGGATC   AG      GAT    TGGTGTCAG   GCG C   CGATG C    ATA                               
||| ||||||||   ||      |||    |||||||||   ||| |   ||||| |    |||                                
GTC CCGCCTAG   TC      CTG    GCCACAGTC   CGC G   GCTGC G    CCG                               
   C        ATA  AATATC   ----         ---   T -TT     T AAAA   TTTTGGATATCGATTTGACAAATAAGTATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630237

CAGTGGCGGATCCAGAAAATCGATTTGTTGGTGTCAGAACGCGTCTATCGATGTCATAATATGCTAATTATACTTAGATCATGGTGTTATAGCATATGAATAAACAGTTTAGCTATAGGTTTTGCCAAAAGTCGTCGTTGTCGCCTGACACCGGTCCTATAACTATAGATCCGCCCCTG

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