SE2630238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7206
  • Oryza sativa
  • SE2630238
  • hAT
  • Hat9
  • Chr02:28708375-28708943
  • TAGGGATG
  • TAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
               GGCGCGACGGGCACGGGTAGTGCCTACCCATACCCATGCCCGTGAGATTATTTGTGCCCGTGGGTATACCCATTACTACATGACGGGTAAGAATGGTTGCCCATGCCCATTGCCCGCGGGCGCCTTATGCCCGCGGGCGTGCCCGTTTACCCGCCACAACAAAAGCAGTGGAACAAAAAGTCTACAAGCTACTAAGTTCGAATCGAACTTAAAACATCAAATATTCTCCGCCTCGGTGTCGTATCTCTCCTCTGGCGGCGATAGAGTAA
TAGGGATGGCAATCG                                                                                                                                                                                                                                                                             
|||||||||||||||                                                                                                                                                                                                                                                                             G
ATCCCTACCGTTAAC                                                                                                                                                                                                                                                                             
               ACGGGCAAACGGGTAAATGGGCGCCCATTTTTGGGATAATCCCAACCCAAACAAGAGGTAAAATATGGGTACCTATAGAATAACCCAGTTTTCGATACGGGCTACCCATTACCCGTACCCATACCCATTAGTGATGTGTACGGGCGAAACGGGCAAATGGGCGCTTTAGATTGAATGTACATCCGATCCTCGTTTTAGGTGATCTTATGTATTCGGTGCAAGAAACAAAAGATGCCAAAGGGAAAATAAAGGGAATAATAAAGAGAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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