SE2620239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7207
  • Oryza sativa
  • SE2620239
  • Mutator
  • M5
  • Chr11:18069441-18070029
  • GGGTGAATA
  • GGGTGAATAGCTATAGTGGTCCTCCAAGTTTCATCCGAGGCTCAGTTTGGTCCTTGATGTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
             TAG       C          CC               C   G T     AATCTA       TA      C    -   CA    A   C   C         -    T  -TCAGAA    C       AACATAACCAACAA      --  ATAAATGACACT ATACCCCTCATTCACATATATAAGAGAAAAAATTGCATGCAATGATTTTTTTTATAGATAATGCATAGTAATTTACGTAAAAGCAAAAATAAATTATATACTTGCAAGTCTATACGATAGGCATTGCTTA
GGGTGAATAGCTA   TGGTCCT CAAGTTTCAT  GAGGCTCAGTTTGGT CTT A GTTTC      TCCGTAT  GTCCTT AAGT TTT  TTTG GTT AAA TTATCCTTG AACC AC       GCCA ATGGCTA              CCCTCT  TG            T                                                                                                                                  
|||||||||||||   ||||||| ||||||||||  ||||||||||||||| ||| | |||||      |||||||  |||||| |||| |||  |||| ||| ||| ||||||||| |||| ||       |||| |||||||              ||||||  ||            |                                                                                                                                   
CCCACTTATCGAT   ATCAGGG GTTCAAAGTG  TTCCGAGTTAAATCA GAA T CAAAG      AGGTGTA  CAGGGG TTCA AAA  AAAC CGA TTT AGTAGGAAC TTGG TG       CGGT TACCGAT              AAAGAT  GT            T                                                                                                                                  
             TAA       A          AC               A   G C     CAAAAC       TC      A    T   CA    -   A   T         C    -  TATTATA    A       --------------      CA  ------------ ATAAAGACAATCTTTTACAGGGAGAACGGGAATTAAACATATGTTGATATGTGATATTTTCTCTTTTGGTTTTACTTATTTGTTATAACGTCTACATGAAGGGTAATAAAGTTGTACACGAGAACTTTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End