SE2620240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7208
  • Oryza sativa
  • SE2620240
  • Mutator
  • M14
  • Chr12:21880421-21880583
  • GAGCAATTC
  • GAGCAATTCTACGGTCCTTGAGGAGGTACCATGAGGTACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A   C                    C           -AAAA    G      AT          A        C TAG
GAGC ATT TACGGTCCTTGAGGAGGTAC ATGAGGTACCA     TTTA TGTAAA  TTGGTACCTC TGGTACCT G   
|||| ||| |||||||||||||||||||| |||||||||||     |||| ||||||  |||||||||| |||||||| |    
CTCG TAA ATGCCAGGAACTCCTCCATG TACTCTATGGT     AGAT ACATTT  AACTATGGAG ACCATGGA C   
    G   A                    A           GAAAA    A      --          C        T CAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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