SE2620241

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7209
  • Oryza sativa
  • SE2620241
  • Mutator
  • M15
  • Chr04:18099894-18100630
  • TGAGAGAAT
  • TGAGAGAATCTATTATATACCACCGAGTTTGTTCGAGTTCAACTATTTGCCATCGATATTGTCTCTTTCTATGATGTACTGGCGACTTTAGCAATTGTTCTACGATATGTCATTAGACTGGACCTCCTTTTAAAAATA

Secondary structure and sequence

TSD    TIR
5'



3'
              --ATA      C              --    CT                        CTA                   GC                        AC   AC -  C           CTCAAAATAC     GA      C   ATAAAC                  TA   TTCAAAAAATAT             T        ----                   ----TAC     -T   A         CTGGTAT    A            CAAA     -    GTGGT  ATGAGAGAGAATTTGCTTATACATGAGATGATAGCATAAAAATATCTTCTGTAGTGTATGA
TGAGAGAATCTATT     TACCAC GAGTTTGTTCGAGT  TCAA  ATTTGCCATCGATATTGTCTCTTT   TGATGTACTGGCGACTTTA  AATTGTTCTACGATATGTCATTAG  TGG  C TC TTTTAAAAATA          CCTTA  GATATA AAG      AATTGATTTATCTCGTTA  AGT            GAAAATTTTTATG GGCCTCCT    TACACAACATGGAAGTTTG       ATAGG  TTT AATTTTTTT       ATTT GTTTTTTCTAAA    TATTA TTAT     AT                                                             
||||||||||||||     |||||| ||||||||||||||  ||||  ||||||||||||||||||||||||   |||||||||||||||||||  ||||||||||||||||||||||||  |||  | || |||||||||||          |||||  |||||| |||      ||||||||||||||||||  |||            ||||||||||||| ||||||||    |||||||||||||||||||       |||||  ||| |||||||||       |||| ||||||||||||    ||||| ||||     ||                                                              
ACTCTCTTAGATAA     ATGGTG CTCAAGCAAGCTCA  AGTT  TAAACGGTAGTTGTAACGGAGAAA   ATTATATGACCGCTGAAAT  TTAACAAGATGTTATATGGTAATC  ACT  G AG AAAGTTTTTAT          GGAAT  TTGTAT TTC      TTAACTAAATAGAGTAAT  TCA            TTTTTGAAAATAC CCGGAGGA    GTGTGTTGTACCTTTAAAT       TATCC  AAA TTGAAAAAA       TAAG TAAAAAAGATTT    TATGA ATAT     TG                                                             
              GACAC      A              AG    AC                        CAA                   AT                        CA   CA T  A           ---------A     AC      A   CAATTA                  CC   --------CATT             C        ATAC                   TTAAACA     TC   G         ----TGT    A            TTTC     A    -----  AATAGACAATATGTCATATATTTTTATGAAATAATAATAATAAAAATTATATTTAGTAGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End