SE2620242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7210
  • Oryza sativa
  • SE2620242
  • Mutator
  • M16
  • Chr04:22673562-22673939
  • GGGAAACTA
  • GGGA

Secondary structure and sequence

TSD    TIR
5'



3'
     AACT       C                                    T         -TAT     -AAA          A  AA                           A                          -         T                  CAA    -C    -   TA
 GGGA    ATTTTAA AGCTCGAGTGGATGTCCACCCGTTTATTGCATGTCA CTAAATGGT    GAAAA    TTAAAAAAAT TG  TAAGATAGATCAATATGTAATGTATCA TCCACAAACATGCAAGTTAAAATTCA CTTCTACGA TGTAATAAAAATAACAAA   AACT  AAAT TAC  
 ||||    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||    |||||    |||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||   ||||  |||| |||  T
 CCCT    TAAGATT TCGAGCTCACCTGCAGGTGGGCAAATAACGTACAGT GATTTACCG    CTTTT    AATTTTTTTA AC  GTTCTATCTAGTTATACATTATATAGT AGGTGTTTGTACGTTCAATTTTAAGT GAAGATGTT ACATTGTTTTTGTTGTTT   TTGA  TTTA ATG  
C    -ACC       A                                    T         CTGT     AAAA          -  -C                           G                          T         C                  AAA    CA    T   TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End