SE2620243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7211
  • Oryza sativa
  • SE2620243
  • Mutator
  • M16
  • Chr11:26432116-26432486
  • GGGAAGAGG
  • GGGAAGAGGATTTTGATCCCTCGAGAGGATATCCTCTCGTTGTTTGCATGTCACTTAAATGGTTATGAAAAAATTTAAGAAGATGTATTAATATATGATATATCACTCCACAAACATACAAGTAAAAATTCAACTTGTACATCTCGCAACGAAAAAAACAAATTTGACCC

Secondary structure and sequence

TSD    TIR
5'



3'
      AG A        C      A               G    C                                    -----------           A       T    C         A     AA              C    C C  C        C     T    - TGAATATACG
GGGAAG  G TTTTGATC CTCGAG GGATATCCTCTCGTT TTTG ATGTCACTTAAATGGTTATGAAAAAATTTAAGAAGA           TGTATTAATAT TGATATA CACT CACAAACAT CAAGT  AAATTCAACTTGTA ATCT G AA GAAAAAAA AAATT GACC C          
||||||  | |||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||           ||||||||||| ||||||| |||| ||||||||| |||||  |||||||||||||| |||| | || |||||||| ||||| |||| |           
CCCTTT  C AAAATTAG GAGCTC CCTATAGGGGAGCAA AAAC TACAGTGAATTTACCAATACTTTTTTAAATTTTTTT           ACATAATTGTA ACTATAT GTGA GTGTTTGTA GTTCA  TTTAAGTTGAACAT TAGA C TT CTTTTTTT TTTAA TTGG G          
      GA -        A      C               G    A                                    TTAACCCTTAC           C       T    A         C     AG              A    A A  A        A     C    C TCGATCAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End