SE2620244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7212
  • Oryza sativa
  • SE2620244
  • Mutator
  • M20
  • Chr01:3379278-3379614
  • GGGAGTACC
  • GA

Secondary structure and sequence

TSD    TIR
5'



3' 
GG  -GTAC     CA  T              -ATG   GTA    ACA       -A      A -  TAAAATCCGATAGATATAATAAAAAGCAAAAAGCAATTAAGAAACACCATAATGGACACTAAATTACCATATCCTCAAGAAAAAGACCAAATCCAATACAAA
  GA     CTATA  TC TTCGAAAGATTTTT    ATC   TCAC   GATTTTT  ATCTTT G AT                                                                                                      
  ||     |||||  || ||||||||||||||    |||   ||||   |||||||  |||||| | ||                                                                                                      A
  CT     GATAT  AG GAGCTTTCTAAAAA    TAG   AGTG   CTAAAAG  TGAGTT T AA                                                                                                      
 G  AAAAC     AG  T              AGAA   -AG    -AG       AG      - A  TGTCACGTAAAAGAACATTCAATGTCACATTAAATATTTTGAATGTGACATTGAAAACATTCAATGTGACATTAAAAACTTAAAAACGTACATTTAAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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