SE2620245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7213
  • Oryza sativa
  • SE2620245
  • Mutator
  • M21
  • Chr01:38221925-38222511
  • GAATTAAAT
  • GAATTAAATTTAAAAATATACTGTTGATTTGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                    --  TTA  - ATATTCGTGGCGTAAAATTTAGAAATATTCGTGGCATAAAATTTTTAGCAGAAATATACCATCAATCTCGCACAACCGTTGTGCAAAGAAGCGTGACGACGCACACCGCGCAGTATCGCGAGACCGAACGTCTTGTCCAGCGGTTCTACTTAATTAGTGATCAATTATCCTAATTATCGAATAATAACTAGTGATTAATTATCCTAATTAGTGATTAATTAACAATTAATCAATCACTAATTAACAATT
GAATTAAATTTAAAAATATACTGTTGATTTGTTTTT  CC   GA A                                                                                                                                                                                                                                                         
||||||||||||||||||||||||||||||||||||  ||   || |                                                                                                                                                                                                                                                         T
CTTAATTTAAATTTTTATATGATAACTAAGCAAAAA  AA   GT T                                                                                                                                                                                                                                                         
                                    AA  ---  A TTATGAGCCCTACATTTAAACAATCGTCTTTATATGACAGCTAGAGCGCGTTGGCAAAGCGTATTCACTGCACCTGCACTGCTGCGTTTATCGTAGATATTGTCCACAGCCGGGGCATGTTACTTTGGCACTGTGGTTTGCTGCTTTAGCTCCTGCACGCACGTCTGCCGCAGTCTGGTGTGCCAGAGCGCGCCGGTTTGGCGCTCTGGCTCGTCAGAGAGAGTTAGTCACTCGCTAATGCTGCCAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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