SE2620246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7214
  • Oryza sativa
  • SE2620246
  • Mutator
  • M21
  • Chr04:30701386-30701974
  • GGAATTAAA
  • GAATTAAATTTAGAAATATACTATTCATTCATTTTATTTTTAGAAATATTCGGAATTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
G                         C     T                    GA  TC   ACTTTTTACAA                    A A   A   C                C     ATCAT         C    TA                C    -      GA  CAGAAGAGCGAGACCGTTCGGTCTCGCTTAACCAATCAGCGATACCGGATTTCAAAATGGTTAATTAGTGATTAATTACCATAATTAACGATTAATTAATTATTAATTAATCGCTAA
 GAATTAAATTTAGAAATATACTATT ATTCA TTTATTTTTAGAAATATTCG  AT  AAA           AAATATACCGTTGATCTCGT C ACC TTA GCGAAAGTGACGTGGA GTGAC     GGGCGGTAT GCGC  GGAAAGTGCGAGACCG GCGG TCTCGC  AA                                                                                                                     
 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||  |||           |||||||||||||||||||| | ||| ||| |||||||||||||||| |||||     ||||||||| ||||  |||||||||||||||| |||| ||||||  ||                                                                                                                     T
 CTTAATTTAAATTTTTATATGATAA TAAGT AAATAAAAGTTTTTATAAGC  TA  TTT           TTTATATGGTAGCTAGAGCG G TGG AAT CGCTTTTACTGCGTCT CACTG     CCCGCCATA CGCG  TCTTTTGCGCTCTGGG GCGC AGAGCG  CG                                                                                                                     
A                         A     T                    AC  CA   AAAATAACATC                    A A   C   T                C     CAACT         A    CC                -    C      --  CCGCTGCCGCGCTCTCGCGCCCTTCCTGCTCGCCAGAGCGAGTTCGTCTCTCGCTGTGGCAGGATTTGACGTAATCCAATCACTGATTACTGGATTAATTAATAAATTGATTATTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End