SE2620247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7215
  • Oryza sativa
  • SE2620247
  • Mutator
  • M21
  • Chr11:14042653-14043312
  • AGAATTAAA
  • GAATTAAATTTAAAAATATATTGTTCTTTTAATTTTTTCTCATGAATATTCGGGATGTAAAATTTTTTGTGTAAATATACCTTCGATCTCGCACAACCGTTGCGCGA

Secondary structure and sequence

TSD    TIR
5'



3'
A                         CT             C                                        T                         AACC  GA T  T        A         --     -    GAAAGTGCGAGAACGCGCGGTCTAGCGCGACGAAGGCACGAGAGCGCGCGGTTTCGCGCAATGAAAGAGCGAGACCGTTCGGTCTCGCGGAATCAAATTGCGTAAATGTCCACAGGCTCCATTTAATTAGTGCTTAATTACTTAATTAGCAATTAACTAATAATAATTAGCAACTAATTA
 GAATTAAATTTAAAAATATATTGTT  TTTAATTTTTTCT ATGAATATTCGGGATGTAAAATTTTTTGTGTAAATATACC TCGATCTCGCACAACCGTTGCGCGA    GA  T GG GTGACGTC TGGGCGGTA  CCGCG CGTT                                                                                                                                                                                    
 |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    ||  | || |||||||| |||||||||  ||||| ||||                                                                                                                                                                                    T
 CTTAATTTAAATTTTTATATGACAA  AAATTAAAAAAGA TATTTATAAGCCCTACATTTTAAAAAACGCATTTATATGG AGTTAGAGCGTGTTGGCAACGCGCT    CT  A CC TACTGCAG ACCTGCCAT  CGTGC GCTT                                                                                                                                                                                    
G                         AT             A                                        C                         CTTA  GC C  T        C         AG     C    CCGCGCTCTGGCGCGCCAGAGCGCCTTGTTGCCCAGAGCGCCTTACCGCGTCGCTCTGTCTTGCCAGAGCGCGTTCGTGACTCGCTCTGGCCACGGTACGACTAAGTTAATCGCTGATTAATAGAACTAATCGCTAATTAATTAATGTTAATTAATTAATAATTAATTAGCGATTAATCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End