SE2620248

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7216
  • Oryza sativa
  • SE2620248
  • Mutator
  • M21
  • Chr06:11881176-11881837
  • CGAATTAAA
  • GAATTAAATTTGAAAATATACTGTTTATCTAATTTTTTTTCAGGAATATTCAGGATGAAAATTTGTTTGTACAAATATACCATCGATCTCGCGTAACCGTTGTGCGAAAATGACGTGGACATGACGTCACCAGCGGTATCGCGCGATGAAAGCGCGAGACCGTGCGGTATCGCGCGATAGCGACGCGAGACCACGCGGTCTCGCGGAAGCAAAGAGTTAGTCCGCTCGGTATCGCTGGTTGAAGCAGCGACACCGGCATGGCAGTCCCGG

Secondary structure and sequence

TSD    TIR
5'



3'
C                          A           -TTC       T        A      G      C         A              C                       A   C     CA             A             C        A         A   A         A               G        T  T   CT    A             C     C    GCA     GTC    CC  C       -    ACCTAATTAACTATTAACTAATAATAATTAGTAATTAATTATTCT
 GAATTAAATTTGAAAATATACTGTTT TCTAATTTTTT    AGGAATA TCAGGATG AAATTT TTTGTA AAATATACC TCGATCTCGCGTAA CGTTGTGCGAAAATGACGTGGAC TGA GTCAC  GCGGTATCGCGCG TGAAAGCGCGAGA CGTGCGGT TCGCGCGAT GCG CGCGAGACC CGCGGTCTCGCGGAA CAAAGAGT AG CCG  CGGT TCGCTGGTTGAAG AGCGA ACCG   TGGCA   CCGG  GT AATGGTT AATT                                             
 |||||||||||||||||||||||||| |||||||||||    ||||||| |||||||| |||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||  ||||||||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||||| ||||||||||||||| |||||||| || |||  |||| ||||||||||||| ||||| ||||   |||||   ||||  || ||||||| ||||                                              
 CTTAATTTAAATTTTTATATGACAAG AGGTTAAAAAA    TTCTTAT AGTCCTAC TTTAAA AAATGT TTTATATGG AGCTAGAGCGTATT GTAACGCGCTTTTATTGCGCCTG ACT CAGTG  TGCCATAGCGCGC ATTTTCGCGCTCT GCGTGCCA AGCGTGCTG TGT GCGCTCTGG GTGCCAGAGCGCCTT GTTTCTCG TC GGC  GCCA AGCGACTAACTTT TCGCT TGGC   ACTGT   GGTC  TA TTAATCA TAAT                                             
T                          G           TAAA       C        A      A      C         C              A                       C   A     CC             C             C        G         C   C         C               G        C  T   TT    G             C     A    GTG     -AC    --  -       C    TAATAGAACTAATCGCTAATTAATTATTAATTAATTAGCGATTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End