SE2620249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7217
  • Oryza sativa
  • SE2620249
  • Mutator
  • M21
  • Chr06:5156452-5157041
  • GGAATTAAA
  • GGAATTAAATTTAAAAATATACTATTCATTCAATTTTTTCTTAGAAATATTCGGGATGCAAAACTTTTTACAGAAATATACCGTCGATCTCGCACAACCATTACACGAAAATGACATAGGCGTGACGTTGCGGACGGTATCGCGCGGGGAAAGCGCGAGACCGCGCGGTCTCGCGGAACAGAAGAGCGAGACC

Secondary structure and sequence

TSD    TIR
5'



3'
             A                                      CG     C    C        G             A          C A    A     A    ATA    -                      C -     A C           C           ACA      C      GTTCGGAATCAAAT     CACGGTCCAAAGGCTCAATTTGATTAGTGATTAAATACTTAATTAACAATTAACTAATAATAATTTAGTAATTAATTATCCTAATTGGTG
 GGAATTAAATTT AAAATATACTATTCATTCAATTTTTTCTTAGAAATATT  GGATG AAAA TTTTTACA AAATATACCGTCG TCTCGCACAA C TTAC CGAAA TGAC   GGCG TGACGTTGCGGACGGTATCGCG G GGGAA G GCGAGACCGCG GGTCTCGCGGA   GAAGAG GAGACC              AGCGA                                                                                          
 |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||||| ||||||||||||| |||||||||| | |||| ||||| ||||   |||| |||||||||||||||||||||| | ||||| | ||||||||||| |||||||||||   |||||| ||||||              |||||                                                                                           
 TCTTAATTTAAA TTTTATATGATAAGTAAGTTAAAAAAGAGTCTTTATAA  CCTAC TTTT AAAAATGT TTTATATGGTAGC AGAGCGTGTT G AATG GCTTT ACTG   CTGT ACTGCAGCGCCTGCTATAGCGC C CCCTT C CGCTCTGGCGC CCAGAGTGCCT   TTTTTC CTCTGG              CTCGC                                                                                          
T            C                                      AG     A    A        A             C          T C    C     C    -CA    T                      A A     C -           A           AAC      -      --------------     GACAGCGAGTAACGTACTCGCTATGGCAAGTTACTGTTAAATTAATCGCCAATTAATAGGAGTAATTACTAATTAATTATTTATTAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End