SE2620250

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7218
  • Oryza sativa
  • SE2620250
  • Mutator
  • M21
  • Chr04:9366613-9367161
  • AGAATAAAA
  • GAATAAAATTTGGAAATATACTGTTCATTCATTTTATTTTTAGAAATATTCAGGATTCAAAATTTCTTAAAAAATATAACGTCAATCTCGCACAACCATTACGTGAAAGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
A    A                          -         T  A       A    TCA      C       ---     A    A    C      C    AC          CGTG C        AC           CAC  -      C           C G       A  T   A        A        C        CCAATC          GATTTCAA     - TAATTAGTGATTAATTAATTATTAATTAATCACTAATTATTAT
 GAAT AAATTTGGAAATATACTGTTCATTCA TTTTATTTT AG AATATTC GGAT   AAATTT TTAAAAA   ATATA CGTC ATCT GCACAA CATT  GTGAAAGTGA    G GTGACGTC  GGGTGGTATCG   GG GAAAAG GCGAGACCGTG G TCTCGCG AA GAA GAGCGAGA CGAACGGT TCGCTGAA      AGCGATACCG        AATGA T                                           
 |||| |||||||||||||||||||||||||| ||||||||| || ||||||| ||||   |||||| |||||||   ||||| |||| |||| |||||| ||||  ||||||||||    | ||||||||  |||||||||||   || |||||| ||||||||||| | ||||||| || ||| |||||||| |||||||| ||||||||      ||||||||||        ||||| |                                            
 CTTA TTTAAACTTTTATATGGCGAGTAAGT AAAATAAAG TC TTATAAG CCTA   TTTAAA AATTTTT   TATAT GCAG TAGA CGTGTT GTAA  CGCTTTTACT    C CACTGCAG  CCCGCCATAGC   CC CTTTTT CGCTCTGGCGC C GGAGCGC TT CTT CTCGCTCT GCTTGCCA AGCGACTT      TCGCTGTGGC        TGGTT C                                           
G    A                          T         -  C       C    -CA      A       TTA     G    C    A      A    CT          ---- -        CT           ACA  A      -           A G       C  T   G        G        T        -TTCTC          -------A     A GAAGGAAACCAATCACTGATTACTGCATTAATTGATAAATTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End