SE2620251

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7219
  • Oryza sativa
  • SE2620251
  • Mutator
  • M21
  • Chr10:3937798-3938385
  • CGAATTAAA
  • CGAATTAAATTTGAAAATATACTGTTTATTTAATTTTTTCTCAATAATATTCGAGATGCAAAACTTTTTACACAAATATACCATCGGTCTCGCTCAACCGTTGCGCGAGAGTGATGTGGGAATGACGTC

Secondary structure and sequence

TSD    TIR
5'



3'
                               A           AT        A         CT       C         A          T                            T      CCGA     -  -   GGAATGGAAGAGAGAGACCGAACGGTCTCGCAAAATCAAACAGCGACACAGTCGGACGGCTCGATTTGATTAGTGATTAATTACTTAATTAACAATTAACTAATAATAATTAGTGATTAATTATCCTAATTAATGATTAATTAATAATTA
CGAATTAAATTTGAAAATATACTGTTTATTT ATTTTTTCTCA  AATATTCG GATGCAAAA  TTTTACA AAATATACC TCGGTCTCGC CAACCGTTGCGCGAGAGTGATGTGGGAA GACGTC    GCGGT CT CGC                                                                                                                                                      
||||||||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||  ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||    ||||| || |||                                                                                                                                                       
GCTTAATTTAAACTTTTATATGACAAGTAAG TAAAAAAGAGT  TTATAAGC CTACGTTTT  AAAATGT TTTATATGG AGCCAGAGCG GTTGGCAACGCGCTTTCACTGTATCCTT CTGCAG    TGCCA AG GCG                                                                                                                                                      
                               C           GT        C         AT       C         C          T                            T      CACC     T  C   TCCCTTTCGTACTCTGGCGTGCCAGAGCGCCTAACCTTATCGCTCTGGCTCGCCTGATTTTCTCTGTAGAGCGCCAGAGCGAGTAACGTGCTCGCTATGGCCAGGTCACGGCTACATTAATCACTAATTACTAAGATTAATCACTAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End