SE2620253

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7221
  • Oryza sativa
  • SE2620253
  • Mutator
  • M23
  • Chr04:13961297-13961878
  • GGGTGAATA
  • GGGTGAATAGTCAATACGGTCCCTAAAGTTTCGCTTCGGGCTCAGTTTAGTCCTCGATGTTTCAAATCATCCAAACGAGTCCTCCAAATTAATCATTTGGGTTAATATAGTCCTTGGAAAAAAAAGTGCCACGTGAGCACGCCAAGTCATCCTCGCATGCAGCGATATGAATAAAATGACCATTCTACCCTTATATATCATATAGAAAAGAAAGAAAAGA

Secondary structure and sequence

TSD    TIR
5'



3'
           C   A                    C                 C  T    C    CA  C           C                                  ---AA                           C              C A       A     -                          G               CAAAAAAAAAAAA    G CCAGGCATAGCATTGTTACGGATGGGTGGCCTACAAAGGAATTACACGATC
GGGTGAATAGT AAT CGGTCCCTAAAGTTTCGCTT GGGCTCAGTTTAGTCCT GA GTTT AAAT  TC AAACGAGTCCT CAAATTAATCATTTGGGTTAATATAGTCCTTGGA     AAAAAGTGCCACGTGAGCACGCCAAGT ATCCTCGCATGCAG G TATGAAT AAATG ACCATTCTACCCTTATATATCATATA AAAAGAAAGAAAAGA             GCCA C                                                   
||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || |||| ||||  || ||||||||||| ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||             |||| |                                                    
CCCACTTATCG TTA GCCAGGGATTTCAAAGCGAA TCCGAGTCAAATCAGGA CT TAAA TTTA  AG TTTGTTCAGGA GTTTAATTAGTAAACCCAATTATATCAGGAACCT     TTTTTCACGGTGTGCTCGTGCGGTTTA TAGGAGCGTATGTC C ATACTTA TTTAC TGGTAAGATGGGAATATATGGTGTAT TTTTCTTTCTTTTTT             AGTG T                                                   
           A   C                    A                 A  C    A    TC  A           A                                  GGGTA                           A              T C       C     C                          A               -TTCTATTTACAA    - ACACATACTAGCAAACTCTTAAAAGTGAATACTAACGACATCGGTTCGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End