SE2620254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7222
  • Oryza sativa
  • SE2620254
  • Mutator
  • M6
  • Chr03:10611648-10612202
  • GGGTGAATA
  • GGGTGAATAGCCAGTTCAGTCCTTCAACTTTTGTTCATGGGTCGAATTAGTCCTTCATGTTTTATAATGTCCAACCAAGACTCTAAAGATTATCATGCGGCTTAATATAGTCCTTAGAGCCACTTAAAACGCTACGTGGACATGCCACGTCATTCGTGCATGTAAGATAACATTTAAATGTCCATTTTAACCTTCAATTTTCTATCAAATAAAGAAAAGTA

Secondary structure and sequence

TSD    TIR
5'



3'
         G     TCA      C          CAT       A         C       A  A       C    -  T  A   A    CA  C  C              A  G  A   A    --    C   G               C           -A   C            A   TA     -CAA     -  TC        -    G  AAATA      A  AATCATAAA           T  TAATTT    AT    CAAT  TATAT
GGGTGAATA CCAGT   GTCCTT AACTTTTGTT   GGGTCGA TTAGTCCTT ATGTTTT TA TGTCCAA CAAG AC CT AAG TTAT  TG GG TTAATATAGTCCTT GA CC CTT AAAC  GCTA GTG ACATGCCACGTCATT GTGCATGTAAG  TAA ATTTAAATGTCC TTT  ACCTT    TTTTC TA  AAATAAAG AAAA TA     AGAAGA GC         ACAAAGAAAAA GT      TTTT  CTAT    GC     
||||||||| |||||   |||||| ||||||||||   ||||||| ||||||||| ||||||| || ||||||| |||| || || ||| ||||  || || |||||||||||||| || || ||| ||||  |||| ||| ||||||||||||||| |||||||||||  ||| |||||||||||| |||  |||||    ||||| ||  |||||||| |||| ||     |||||| ||         ||||||||||| ||      ||||  ||||    ||     A
CCCACTTAT GGTTA   TAGGAA TTGAAAGCGA   CCTAGTT AATCAGGGA TGTAAAA AT ACAGGTT GTTC TG GA TTC AGTA  AC CT AGTTATATCAGGAA CT GG GAG TTTG  CGGT CAC TGTACGGTGTAGTAG TACGTACGTTT  GTT TAAATTTACAGG AAA  TGGGA    AAAAG AT  TTTATTTC TTTT AT     TCTTTT TG         TGTTTTTTTTT CG      AAAA  GGTA    CG     
         G     TAC      C          ATT       A         C       C  A       T    A  -  A   A    AC  A  A              A  -  -   A    TA    A   A               A           AA   A            -   TG     ATAC     T  CC        C    G  --AAC      G  ---------           T  ------    CT    --AC  TTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End