SE2620258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7226
  • Oryza sativa
  • SE2620258
  • Mutator
  • M27
  • Chr07:20907862-20908241
  • GGGGACATA
  • GGGGACATATCCGGTGAAAATGAGCTAAGTGTTGAAAACTCGTGAAAATCATACCTAAAAGTTTTGTAAATTCATGAAAAAAATACTAGAGATAGGTGTAGATATGAAATACATTCTCACCAAATCTCAAGTTCAAACTCAACTTCGTTTAGGAGTAACAAAAAAGACAAATTTCAGGTGAATAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                        C                                                      C  G           C        G   T                              AACA
GGGGACATATCCGGTGAAAATGAGCTAAGTGTTGAAAACTCGTGAAAATCATACCTAAAAGTTTTGTAAATT ATGAAAAAAATACTAGAGATAGGTGTAGATATGAAATACATTCTCACCAAATCT AA TTCAAACTCAA TTCGTTTA GAG AACAAAAAAGACAAATTTCAGGTGAATAGT    
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||     
CTCCTGTATAGGCCACTTTTACTCGATTCACAACTTTTGAGCACTTTTAGTATGGATTTTCAAAGCATTTAA TACTTTTTTTATGATCTCTATCCACATCTATATTTTATGTAAGAGTGGTTTAGA TT AGGTTTGAGTT AAGCAAAT CTC TTGTTTTTTCTGTTTAAAGTCCACTTATCA    
                                                                        A                                                      A  G           C        A   T                              CAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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