SE2620259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7227
  • Oryza sativa
  • SE2620259
  • Mutator
  • M28
  • Chr04:12280755-12281525
  • GGATGCCAC
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
                        ACCCTATAGGATATCCTTATAAAAATACCACTCCATAGATGTGGCTTCTTAATGAAATGCTACTTTGGGGGTGATTAGAGGCTTTTAATCTCCTTTATTGGAGAGGAAGGTGAAGTGTGGAGTGGGACACAACAATGGTGAGTGGTGTGGAGGAGGAGAAAGTGAGAGGGGAGGAGGAGGAAGAGGACCGGCCACAGCTGAGCGCGGCGGCAGTGGAGGCGCTACCGGAGTTCCTGCTGGAGCAACGGCGGGACGGAGGGGAGGAAGGCAGCGACGGGGTGGAGCCGGTGGCGGAGGACTGGCGGTTGAGCCAGTTCTGGTACGATGAGCACACGGAGCGGGAGCTCGCCGGGAAGGTCGTCCGCCCCGT
                 GGATGCC                                                                                                                                                                                                                                                                                                                                                                                  
                 |||||||                                                                                                                                                                                                                                                                                                                                                                                   
                 CGGTGAG                                                                                                                                                                                                                                                                                                                                                                                  
CTCTTTAAATTGTGATA       GTATCTCCACCGAAATTGTCCTACGGTGAGATATTCTACAAGAATATTTTTACGGTGAAGTATCTCTACCGAAGAATTATTTTACGGTGAAATCCCACTAATCTCCGAAGATTAGTGTGAAACCCCACTAATCTACGGATAGGTGGCGGCCGGCCTGGCGGCGACCCAGGGGGGGCTAGACCTCCGGCAGAAGCTGGGAGGTGGAGCCGGCCAACGGAGAAGGTGGCGCGGCGAGGACTGCCACGGGGCTTGAGGCGGCAACAGTGGTTGCGGAAAGCCCAACGAGCAGAACTCCATCCGCATCTCGCAACCCGTACGGTGCGTCCGGTGGCGTCGTCGCCACCGCCTCCTCCGACCCGGCCTCTCCCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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