SE2620260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7228
  • Oryza sativa
  • SE2620260
  • Mutator
  • M29
  • Chr11:24775884-24776589
  • GAGAATTTT
  • GAGAATTTTCAGAATATAACACCCAATACACACTGCTTCCAGGATTTGTCACCCAATTCACACTACTTTCAGAATACACCACTAGAGTGCGAATTTTCTTCGTTCCGTGACACTCCGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
                             A        CC             C      C                                                              AGCGTCAGTCCTCCGTCCTCCCGGCGCCACCGTTGTCAGTCCACCGCCGCTCGTGCCCGTGTCAGCTCCGGCGTCGCCGGTCCGTCGCTGCCCGCGTCAGCCCCGCCGTTGCTCGTCCGTCGTCACCCGCGTCGGCCCCGCCGTCGCTCGTCCGTCGCCGCCATCGGCGCACGCGGTGGAGGGCCGGAGGAGAGGGGAGCAGCGGTGGAGGGCAGAGGGCTTCGAGCTCC
GAGAATTTTCAGAATATAACACCCAATAC CACTGCTT  AGGATTTGTCACC AATTCA ACTACTTTCAGAATACACCACTAGAGTGCGAATTTTCTTCGTTCCGTGACACTCCGTCCCCT                                                                                                                                                                                                                                      
||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                                                                                                                                       
CTCTTAAAAGTCTTATATTGTGGGTTATG GTGACGAA  TCCTAAACAGTGG TTAAGT TGATGAAAGTCTTATGTGGTGATCTCATGCTTAAAAGAAGCAAGGCATTGTGAGGCAGGTAG                                                                                                                                                                                                                                      
                             C        TA             A      A                                                              GTTTCTGCGGGCAGCAGTCAAGTAGGTAGAGAGCGGCAAACGGGCGTGCTTAGACCGGCGGCCGCTCGAGCAGGAGGGGGTGCGGCCGCTCGAGCAGGAGGGGTGTGATCGCTCGAGGAGGAGGGCGTGCGTAGACCGCTCGATCGAGCACAGCAGGGGCTCGAGTCGGCGGCGGCGTGGCCCGACGGCGGTGGCGCGGGGCTCGGCCGCGGCCAGGTTGGAGGCGGCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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