SE2620261

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7229
  • Oryza sativa
  • SE2620261
  • Mutator
  • M30
  • Chr10:5981207-5981995
  • GAGAAAATT
  • GAGAAAATTGCATATCTACCATCGCATAAGTTTGGATTCGCTGGAATACCATCACTAAAAAGTGTTTCACTAGAATACCACTCTTAACTAGGTGTGTTCGTCAAAATACCATCACAGACGAAAATGCCCCCGCTTCTTCATCTTCCACCTTCGACACGGG

Secondary structure and sequence

TSD    TIR
5'



3'
                                                     A  -  AA  T     A           C           -   G  C  C           AC               C C      A      A -       A    CCACAC              AGACGAGGACACGCCAGCTCGCGTCGTCTCAGCCGCGCGCCGTCGCGCCGCTGCCCCGCCGCTCGGCCGGCCTCCGTCGCGCCGTCGCGCCGCCGCCCCGTCCCGACTCGCCGCCCGTGTCGTGTCGGTCGGCCGCCGCCGCGTGCGTCGTCTCGGCCTGTCGCTGCCTCGCTGGCGTCGTCTCGGCCGGCCGCCGTCGACGCGCCGCCCCCAC
GAGAAAATTGCATATCTACCATCGCATAAGTTTGGATTCGCTGGAATACCATC CT AA  AG GTTTC CTAGAATACCA TCTTAACTAGG TGT TT GT AAAATACCATC  AGACGAAAATGCCCC G TTCTTC TCTTCC C CTTCGAC CGGG      GGCAGCGGCAGGTG                                                                                                                                                                                                                      
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  || ||||| ||||||||||| ||||||||||| ||| || || |||||||||||  ||||||||||||||| | |||||| |||||| | ||||||| ||||      ||||||||||||||                                                                                                                                                                                                                      C
CTCTTTTAACGTATAGATGGTAGCGTATTCAAACCTAAGCGACTTTATGGTAG GA TT  TC CGAAG GATCTTATGGT GGAGTTGGTCC GTA AA CG TTTTATGGTAG  TCTGTTTTTATGGGG C AAGAAG AGAAGG G GAGGTTG GCCT      AGTGGCCGTAGGTG                                                                                                                                                                                                                      
                                                     G  A  AG  -     C           A           T   G  A  A           AA               A T      A      A C       -    -TCTCG              GCGACACGGTAACCACGGTGGAACGGCCGCCGCTACCACCGCGCCGGGAGGGGTAGCAGGAGCGGAAGGTAGGACGGGTGGCGCGACCACACTCCTCTGGCGTCGACAGCTGTTGCAGCTGTCTCGGCCCCTCAGCTGGCCCCTCACCCAGCTGCCTCTGCTTGAGTGGCCGCTGTTCCCGCCGCGTAGTTCCGCCCGCCTGCTTGAGCGGCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End