SE2620262

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7230
  • Oryza sativa
  • SE2620262
  • Mutator
  • M7
  • Chr05:6764541-6765027
  • GAGAGAATC
  • GAGAGAATCCATTATTTACCACTGACTTTATCACACGTCTACGATTTGCTACTGACTTTATCATGTTCTACAATATGCCATCGACTTTTGCTTAACTTCTACAATTTACCATCGCCGTCCGGTTAGTCTCCGTTAGTACTGTACAAATTTGTCAAAATGACCAAAATACCCCTGGGAGAAAAGGTTTCAAAATTTGGATAAAAATTATGAAATATCATATT

Secondary structure and sequence

TSD    TIR
5'



3'
    G          TTA           A  A                          A                                          A                         T                        A                    G  G     G                   A    -       C     TCAAGTTTTTGGTC    TTT    GTT
GAGA AATCCATTAT   CCACTGACTTT TC CACGTCTACGATTTGCTACTGACTTT TCATGTTCTACAATATGCCATCGACTTTTGCTTAACTTCTAC ATTTACCATCGCCGTCCGGTTAGTC CCGTTAGTACTGTACAAATTTGTC AAATGACCAAAATACCCCTG GA AAAAG TTTCAAAATTTGGATAAAA TTAT GAAATAT ATATT              AAAT   GGAT   
|||| ||||||||||   ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||| |||| ||||||| |||||              ||||   ||||   T
CTTT TTAGGTAATA   GGTGACTGAAA AG GTGCAGATGCTAAACGGTGACTGAAA AGTGCAAGATGTTATACGGTAGCTGAAAACGAATTGAAGATG TAAATGGTAGTGGCAGGCCAATCGG GGCAATCATGACATGTTTAAACAG TTTACTGGTTTTATGGGGAT CT TTTTT AAGGTTTTAAACCTATTTT AATA TTTTATA TATAA              TTTG   TCTA   
    A          TAC           C  C                          C                                          C                         T                        C                    A  G     G                   -    G       A     ------------TA    TAT    ACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End