Plant MITE

SE2620263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7231
Oryza sativa
SE2620263
Mutator
M32
Chr08:4147087-4147242
GAGGAATTT
GGAATTTTAC

Secondary structure and sequence

TSD TIR

5'

3'

GA  -        AGTAG       AT    -          T -     TATTCTAAAATTTTTGGTACCTTGAGGTACT
  GG AATTTTAC     TTGAGAA  TACC TTGAGGTACC A AATTT                               
  || ||||||||     |||||||  |||| |||||||||| | |||||                                
  CC TTAAAATG     GATTCTT  CATG ATCTCCATGG T TAAAA                               
 C  A        ATAGA       -C    T          - A     GATCACATTTTAAACCATGGAGATCCATGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620263

GAGGAATTTTACAGTAGTTGAGAAATTACCTTGAGGTACCTAAATTTTATTCTAAAATTTTTGGTACCTTGAGGTACTTAGTACCTAGAGGTACCAAATTTTACACTAGAAAATATGGTACCTCTATGTACCTTCTTAGAGATAGTAAAATTACCC

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