SE2620265

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7233
  • Oryza sativa
  • SE2620265
  • Mutator
  • M33
  • Chr01:33757862-33758329
  • GAGTAAAAT
  • GAGTAAAATACACCAGCGGTCCTTAAACTTGTCAGGAGGTTTCACTTAGGTCCACGAACTTACAAAGTGCACATCGAGATCTCTAAACTTGGTTTATTGTATCATCCCGGTCCAAAGCCGCGTTTGACTGTGGTCTTGTCTACGTGGCACGCCACGTGGACAATGACATGTAATTTATTA

Secondary structure and sequence

TSD    TIR
5'



3'
         A                                         C         A                A                          C     C                                                 A        TAA   A   TTATTTT        T         T     C   G  G  AGA      A GAGG
GAGTAAAAT CACCAGCGGTCCTTAAACTTGTCAGGAGGTTTCACTTAGGT CACGAACTT CAAAGTGCACATCGAG TCTCTAAACTTGGTTTATTGTATCAT CCGGT CAAAGCCGCGTTTGACTGTGGTCTTGTCTACGTGGCACGCCACGTGGAC ATGACATG   TTT TTA       TTTCTCTC TCTTCCTTC TTTTT TCA TG TG   GGCGGC C    
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||| |||       |||||||| ||||||||| ||||| ||| || ||   |||||| |     
CTCATTTTA GTGGTCGCCAGGAATTTGAACAGTCCTCCAAAGTGAATCCA GTGCTTGAA GTTTCGCGTGTAGCTC AGGGATTTGAACCAAATAACATAGTA GGCCA GTTTTGGCGCAAACTGGCACCAGAACGGATGCACCGTGCGGTGCATTTG TACTGTAC   AAA AAT       AAAGAGGG AGAAGGAAG AAAAA AGT GT AC   TTGCCG G    
         C                                         T         C                C                          A     A                                                 C        CTA   A   -TTTTTT        T         T     -   G  G  --G      G GAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End