SE2620266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7234
  • Oryza sativa
  • SE2620266
  • Mutator
  • M34
  • Chr03:23548234-23548974
  • GGGGCTGTC
  • GGGGCTGTCTATACATCTTATGACAGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
     C  T     CA  TTA   CA    ATCCCACCTCCT   ATT  A                 ATGCT               ACCATTTTAACCCTAA  C         TCCCCCGATTCA     CAC - CGCCACCACTCGCATGATCCCCCGCCACCATCGCCGCCACCGCCCCACCGCGCCGCCGCCCGCCTCGCCGGCTGGCCGGAAGGGGTCAACGGCGCCGGCGAGCCCCCTCCCCCTCTCCCCCTCCCCTCCTCTCCTTGAGGTGGCGACGGTGAGGTGCCCCCGCCCCGCCGTCTTCCCCGTCTCCGGCGGCTCCCCGCCACCGGATCCGCCACCACCGGCTGCCGCCTCCTAATCTCACGCTTGCT
 GGGG TG CTATA  TC   TGA  GAAA            ATC   TA ATTTTGGACCATTGGAT     TCAAGATTCGTGCAT                CT CTCTCCTCC            GATCG   G C                                                                                                                                                                                                                                                     
 |||| || |||||  ||   |||  ||||            |||   || |||||||||||||||||     |||||||||||||||                || |||||||||            |||||   | |                                                                                                                                                                                                                                                      
 CCCT AC GATAT  AG   GCT  CTTT            TAG   GT TAAAACCTGGTAACCTA     GGTTCTAAGCACGTA                GA GAGAGGAGG            GGCCG   C C                                                                                                                                                                                                                                                     
G    A  -     AC  TAA   TA    AAACCCCTTCTT   AAT  C                 GGTAT               -------------GCC  A         --------TTGA     --- C GAGGGGAAGAAGAGGCCGCGGCCACTGTGGGGTTGAGGTCGCCCAATCCGAAACCCCAACCCCACTCCTATCCTCCCTCCAACCCCCTCCCCCTTCTCCCCCCAAAGGAGCCCCGAATCTCCCTACCGGTACCCGCCGCCTCCTGGCCGCCACCCGCCACCTGAGGCCGCCCGCCGCTCCGCCGCCGCCACGGCGGCGGCGTCCCTACCTCCTCCCGTCACCCGGCCGCAGCCGCCGCCCCCTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End