SE2620267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7235
  • Oryza sativa
  • SE2620267
  • Mutator
  • M36
  • Chr01:39218119-39218744
  • CCGAAATTT
  • CCGAAATTTTTACATCTAAGCACATGCAACCTTCTAATTCCAAATATGAGTAGGTAATGGATGTAGTTCTATTTTTAATCAA

Secondary structure and sequence

TSD    TIR
5'



3'
    AA     AC              A     C           A      G   A  -GA  T      A           ---    C   --- A   GTGTGTGCAGTGGTCTTCCATCGGACTTAATGTCAAACGAAATATAACAAACTAATGGCTGCTGATCATTGGACAAATCACTAGCTCGTAGCAACTTGTTTAGGTCTAATTGATTGTTTGTCGTCAGAAAAGAAAATCTTATTACCATTTGCAATTGGTTGGATCAACCATTACGAGATAGGGCACCGTACCGTCATGCCGTTAGTCTCGAGCTT
CCGA  TTTTT  ATCTAAGCACATGC ACCTT TAATTCCAAAT TGAGTA GTA TG   TG AGTTCT TTTTTAATCAA   GAAG CCA   C TGT                                                                                                                                                                                                                       
||||  |||||  |||||||||||||| ||||| ||||||||||| |||||| ||| ||   || |||||| |||||||||||   |||| |||   | |||                                                                                                                                                                                                                       T
GGCT  AAAAA  TAGATTCGTGTACG TGGAG ATTAAGGTTTA ACTCGT TAT AC   AC TTAAGA AAAGATTAGTT   TCGA CGT   T GTT                                                                                                                                                                                                                       
    AA     AT              C     T           C      A   A  AGG  -      C           TGA    T   CCG -   TCGTTTACTAGGTAATTGTACAAAGCGATCATAATGTTAATTGAAACAACTACGTCGAAGATACACTTTGTTTAGTTCTAAATAATCGTGTGTATTATAATACTAAAACTACTAGGTTCGTCTACCTAATATAAAGTTGGCTGGCGATGTCAAGGTTAAAAGTTTTGCTTTTGTTGTAGGTTCAGTTTATACCTAATTCTTTTTTTTACTGCTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End