SE2620268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7236
  • Oryza sativa
  • SE2620268
  • Mutator
  • M37
  • Chr11:3420840-3421086
  • GGATCCGAT
  • GGAT

Secondary structure and sequence

TSD    TIR
5'



3'
    CCGAT              C G          AAA   -----   GT   A  -   -A  GC   AT       -G    TC     TATATCCGAG     ---   CAAAACACTGTAGTGATGGAAA
GGAT     TCAGGTGCAGTAGC A TGGGACTGCA   TAA     GCA  CAA CT AGC  TC  ATG  TTAAAAT  GACG  CCAGA          CACTG   TAG                      
||||     |||||||||||||| | ||||||||||   |||     |||  ||| || |||  ||  |||  |||||||  ||||  |||||          |||||   |||                       
CCTA     AGTTTACGTCATCG T ATCCTGACGT   ATT     CGT  GTT GA TCG  AG  TAC  AGTTTTA  TTGC  GGTTT          TGCCT   CCG                      
    ACTCT              A G          GCC   GATGA   GT   A  C   GG  -A   --       GA    -C     ----------     AAA   TGTCATTTTAGTCTTGTCATGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End