SE2620270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7238
  • Oryza sativa
  • SE2620270
  • Mutator
  • M39
  • Chr04:13236429-13236824
  • GGCAAAATT
  • GGCAAAATTGATTATATAGTATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGTTACCGGTTCACTTTAATAGCATCCAAAGTTCACCCTGTTCCCATTTTTAGCACTTCCGTCAATTTTTCCGTCCGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A                                                            T                     C                              ---------            TAATCGTTAT                          A              TGACA    TTA
GGCAAAATTG TTATATAGTATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGTTACCGGTTCACT TAATAGCATCCAAAGTTCACC TGTTCCCATTTTTAGCACTTCCGTCAATTT         TTCCGTCCGTCT          TGATCCAGCCACACACATGATATGAC TTTCTACCCCTCAT     TGCA   
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||||||||||||          |||||||||||||||||||||||||| ||||||||||||||     ||||   T
CCGTTTTAAC AATATATCGTAGCTTTCAAGTGCAAAAACCAAAATATCGTGGCTTTCAATGGCCAAGTGA ATTATCGTGGGTTTCAAGTGG ACAAGGGTAAAAATTGTGAAGGCAGTTAAG         AAGGCAGGCAGA          ACTAGGTCGGTGTGTGTGCTATACTG AAAGATGGGGAGTG     ATGT   
          C                                                            T                     T                              AGCTATCAA            ----------                          C              --TTC    TCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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