SE2620271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7239
  • Oryza sativa
  • SE2620271
  • Mutator
  • M40
  • Chr05:1733397-1733553
  • GGGCCAATT
  • GGGCCAATTTGGCTAGTACCATTACAAAAATCACGGAGTTGGAAAATACCATCGTATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
   CC       CT         A    A  C   -      G                  TCAT           TCC
GGG  AATTTGG  AGTACCATT CAAA AT ACG GAGTTG AAAATACCATCGTATGTG    TGACATGTGGG   
|||  |||||||  ||||||||| |||| || ||| |||||| ||||||||||||||||||    |||||||||||   A
CCC  TTAAACC  TTATGGTAA GTTT TA TGC CTCAAC TTTTATGGTAGCATGCAC    ACTGTACACCC   
   AT       TT         C    C  -   A      G                  TCTT           CGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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