Plant MITE

SE2620272

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7240
Oryza sativa
SE2620272
Mutator
M8
Chr06:1867659-1868208
GAGTAAAAT
GAGTAAAATGCACCGGTGGTATCACAACTTGCGATGTGGGTGCAATTTAGTCACTCATCTTGCAAATTGCTCAAACAAGTTACTCATCTTGCTTCGATGGTGC

Secondary structure and sequence

TSD TIR

5'

3'

    A          G       AC         T                       C   C   T          ----              C    AT           TACCAAATACATTTTCACACGGATTGTTTGTTTTTAAATTGGAGTCCATATTGACCTAGCATCATGTATTTTTTTACCAATGTGGACAGGATAAGCATTAAAATTACATATTAACACTTATATTTCCATGTATATGCTACTACTCCTGCTTTCAATGAACATTA
GAGT AAATGCACCG TGGTATC  AACTTGCGA GTGGGTGCAATTTAGTCACTCAT TTG AAA TGCTCAAACA    AGTTACTCATCTTG TTCG  GGTGCAAATGT                                                                                                                                                                    
|||| |||||||||| |||||||  ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||    |||||||||||||| ||||  |||||||||||                                                                                                                                                                     
CTCA TTTACGTGGT ATTATGG  TTGAGTGCT CACCCACGTTAAATCAGTGGGTA AAC TTT ACGAGTTTGT    TCAGTGAGTAGAAC AAGC  CCACGTTTAGT                                                                                                                                                                    
    C          A       AA         C                       A   A   T          TTGT              A    AC           GTATTTTGTACACAGCATACCTCACAAGCGTTACTTCAATATACGATACAATTAAACAAATGTTTGTACCAGTGTGCTAAGTATTTATTAGGTTACACGTCATGATGGCCATCATTTTAAGTTAATTTCTACTTAAAACAATAACTATCGGTTCGTATTATACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620272

GAGTAAAATGCACCGGTGGTATCACAACTTGCGATGTGGGTGCAATTTAGTCACTCATCTTGCAAATTGCTCAAACAAGTTACTCATCTTGCTTCGATGGTGCAAATGTTACCAAATACATTTTCACACGGATTGTTTGTTTTTAAATTGGAGTCCATATTGACCTAGCATCATGTATTTTTTTACCAATGTGGACAGGATAAGCATTAAAATTACATATTAACACTTATATTTCCATGTATATGCTACTACTCCTGCTTTCAATGAACATTACCATATTATGCTTGGCTATCAATAACAAAATTCATCTTTAATTGAATTTTACTACCGGTAGTACTGCACATTGGATTATTTATGAATCGTGTGACCATGTTTGTAAACAAATTAACATAGCATATAACTTCATTGCGAACACTCCATACGACACATGTTTTATGTGATTTGCACCCACGAAACAAGATGAGTGACTTGTTTGTTTGAGCATTTTACAAAATGGGTGACTAAATTGCACCCACCTCGTGAGTTAAGGTATTAATGGTGCATTTCACTC

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