Plant MITE

SE2620273

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7241
Oryza sativa
SE2620273
Mutator
M42
Chr07:14541201-14541447
GGGAGAATT
GGGAGAATTTACTATTTGCCACTCTCTCAAAATGCCAGTGCTCAAATGCCACTCTCCCAAATTTTCATTCCCAAATGCCACCCGGGCCCACATGTCAGCCTCACTCATCAT

Secondary structure and sequence

TSD TIR

5'

3'

                                                                 C                                        A    CGGG  CC   TCA
GGGAGAATTTACTATTTGCCACTCTCTCAAAATGCCAGTGCTCAAATGCCACTCTCCCAAATTTT ATTCCCAAATGCCACCCGGGCCCACATGTCAGCCTCACTC TCAT    TC  GCA   
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    ||  |||   C
CCCTCTTAAATGATAAACGGTGAGAGAGTTTTACGGTCACGAGTTTACGGTGAGAGGGTTTAAAA TAAGGGTTTACGGTGGGCTCGGGTGTACAGTCGGAGTGAG GGTA    AG  TGT   
                                                                 A                                        A    ----  TT   TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620273

GGGAGAATTTACTATTTGCCACTCTCTCAAAATGCCAGTGCTCAAATGCCACTCTCCCAAATTTTCATTCCCAAATGCCACCCGGGCCCACATGTCAGCCTCACTCATCATCGGGTCCCGCATCACTTTTGTTTGAATGGAGAGTGAGGCTGACATGTGGGCTCGGGTGGCATTTGGGAATAAAAATTTGGGAGAGTGGCATTTGAGCACTGGCATTTTGAGAGAGTGGCAAATAGTAAATTCTCCC

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