Plant MITE

SE2620274

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7242
Oryza sativa
SE2620274
Mutator
M43
Chr07:4586580-4586835
GGGAAAATA
GGGAAAATATGTAGTGCAAACCATATATGTAGTGGAAACTTGGAAACTACCGTTGGATCGAGAAATGGACGTCCGAGATTCGTCCACATCACCATGAGTTAAAATTTAACTCCCAG

Secondary structure and sequence

TSD TIR

5'

3'

                               G            AA                           C             A                        C   TAAA    TAAC
GGGAAAATATGTAGTGCAAACCATATATGTA TGGAAACTTGGA  CTACCGTTGGATCGAGAAATGGACGTC GAGATTCGTCCAC TCACCATGAGTTAAAATTTAACTC CAG    ATTT    
||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||    ||||     
CCCTTTTATACATCACGTTTGGTGTATACAT ACTTTTGAACCT  GATGGCAACCTAGCTCTTTACCTGCAG CTCTAAGTAGGTG AGTGGTACTCAATTTTAAATTGAG GTC    TGAG    
                               G            TG                           A             C                        C   TAAG    TACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620274

GGGAAAATATGTAGTGCAAACCATATATGTAGTGGAAACTTGGAAACTACCGTTGGATCGAGAAATGGACGTCCGAGATTCGTCCACATCACCATGAGTTAAAATTTAACTCCCAGTAAAATTTTAACTCATGAGTGAATCTGCGAGTTAAATTTTAACTCATGGTGACGTGGATGAATCTCAGACGTCCATTTCTCGATCCAACGGTAGGTTCCAAGTTTTCAGTACATATGTGGTTTGCACTACATATTTTCCC

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