Plant MITE

SE2620275

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7243
Oryza sativa
SE2620275
Mutator
M43
Chr08:7636877-7637173
GGATTCAGA
GGATTCAGATTGGGTGACATAGGATAGTCATGTTACAAGGTGACATAGCATAGATCTCGGCCCTCCAAAACAAATCTAATGGCTGAGATTCGTCCACGTCATCACGAGTTAAAATTTAACTCCAGTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

                       A   T               C     A              CC                           C                            ----C       TTTTAACTCCTGCA        C
GGATTCAGATTGGGTGACATAGG TAG CATGTTACAAGGTGA ATAGC TAGATCTCGGCCCT  AAAACAAATCTAATGGCTGAGATTCGT CACGTCATCACGAGTTAAAATTTAACTC     AGTAAAA              ATTTTACT 
||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     |||||||              |||||||| C
CCTAAGTCTAACCCACTGTATCC ATC GTACAGTGTTCCACT TATCG ATCTAGAGTCGGGA  TTTTGTTTAGGTTGCCGACTCTAAGCA GTGCAGTAGTGTTCAATTTTAAATTGAG     TCATTTT              TAAAATGA 
                       C   C               A     C              AA                           A                            CATCC       --------------        C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620275

GGATTCAGATTGGGTGACATAGGATAGTCATGTTACAAGGTGACATAGCATAGATCTCGGCCCTCCAAAACAAATCTAATGGCTGAGATTCGTCCACGTCATCACGAGTTAAAATTTAACTCCAGTAAAATTTTAACTCCTGCAATTTTACTCCCAGTAAAATTTTTACTCCTACGAGTTAAATTTTAACTTGTGATGACGTGAACGAATCTCAGCCGTTGGATTTGTTTTAAAGGGCTGAGATCTACGCTATATCACCTTGTGACATGCCTACCCTATGTCACCCAATCTGAATCC

Copy Cancel