Plant MITE

SE2620276

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7244
Oryza sativa
SE2620276
Mutator
M44
Chr08:3662845-3663400
GAATTTTTT
GAATTTTTTTTAAAAGTAATATGATTTTAATGGAAAATCGCAAAACTATAGGTCAGTTAGGCGAAATCGCAAGTTTAGCACCCTATCGAACAACCGTGGTTCGACAAGGTACCTATCGAACAACCACAGTTCGATAGGGTACCTGTCGAACTGCGGTAGTTCGACAGG

Secondary structure and sequence

TSD TIR

5'

3'

                                             -       T                               A                     A  -                             G   C            GT           -------     AAAAAAATCAAAAAAAGAGAAAAATCACTGTTGCATACTGTTCACAATACCCTATCGAACTAAGGCAGTTCGATATGTGTCTGCGAGCACTGTAGCATCAC
GAATTTTTTTTAAAAGTAATATGATTTTAATGGAAAATCGCAAAA CTATAGG CAGTTAGGCGAAATCGCAAGTTTAGCACCCT TCGAACAACCGTGGTTCGACA GG TACCTATCGAACAACCACAGTTCGATAGG TAC TGTCGAACTGCG  AGTTCGACAGG       TGATT                                                                                                     
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||       |||||                                                                                                      
CTTAAAAAAAATTTTTGTTATACTAAAATTACCTTTTAGCGTTTT GATATCT GTCAATCCGCTTTAGCGTTCAAATCGTGGGA AGCTTGTTGGCGCCAAGCTGT CC ATGGATAGCTTGTTGGTGTCAAGCTGTCC ATG ACAGCTTGACGC  TCAAGCTGTCC       CAGGT                                                                                                     
                                             T       C                               C                     C  T                             -   T            AG           TATCCAC     TTTTGTTTATTTTTTAATGTACTTGTCATAGTGATGTTACGATCCGTCCCTGTATAGCTTGTCGGTTTCAAGCTATCCCAACGCACTTGTCACTACGATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620276

GAATTTTTTTTAAAAGTAATATGATTTTAATGGAAAATCGCAAAACTATAGGTCAGTTAGGCGAAATCGCAAGTTTAGCACCCTATCGAACAACCGTGGTTCGACAAGGTACCTATCGAACAACCACAGTTCGATAGGGTACCTGTCGAACTGCGGTAGTTCGACAGGTGATTAAAAAAATCAAAAAAAGAGAAAAATCACTGTTGCATACTGTTCACAATACCCTATCGAACTAAGGCAGTTCGATATGTGTCTGCGAGCACTGTAGCATCACTGTAGCATCACTGTTCACGCAACCCTATCGAACTTTGGCTGTTCGATATGTCCCTGCCTAGCATTGTAGTGATACTGTTCATGTAATTTTTTATTTGTTTTTGGACCACCTATCCTGTCGAACTGACGCAGTTCGACATGTACCTGTCGAACTGTGGTTGTTCGATAGGTATCCCTGTCGAACCGCGGTTGTTCGACAGGGTGCTAAACTTGCGATTTCGCCTAACTGCTCTATAGTTTTTGCGATTTTCCATTAAAATCATATTGTTTTTAAAAAAAATTC

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