SE2620277

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7245
  • Oryza sativa
  • SE2620277
  • Mutator
  • M44
  • Chr01:18020301-18020856
  • GAATTTTTT
  • GAATTTTTTTTAAAAGCAATATGATTTTAATGGAAAATCGCAAAACTATAGGTCAGTTAGGCAAAATCGCAAGTTTAGCACCCTGTCGAACAACCGCGGTTCGACAGGGATACCTATCGAACAACCACAGTTCGACAGGTACATGTCGAACTACGTGAGTTCGACAGGGTAGGTGGTCCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
                C                                             A                                 C            A                         --CA     A         A  TG           ----GT       CC     CAAATA         A  -AAC   -  -    ACA  --- -  AG    G   A ATCGAACAGCCAAAGTTCGATAGGGTTGCGTGAACAGCGTGC
GAATTTTTTTTAAAAG AATATGATTTTAATGGAAAATCGCAAAACTATAGGTCAGTTAGGC AAATCGCAAGTTTAGCACCCTGTCGAACAACCG GGTTCGACAGGG TACCTATCGAACAACCACAGTTCGA    GGTAC TGTCGAACT CG  AGTTCGACAGG      AGGTGGT  AAAAA      AAAAATTAC TG    AGT AT CACT   AT   G CT  TCAG GAC T                                          
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    ||||| ||||||||| ||  |||||||||||      |||||||  |||||      ||||||||| ||    ||| || ||||   ||   | ||  |||| ||| |                                          T
CTTAAAAAAAATTTTC TTATACTAAAATTACCTTTTAGCGTTTTGATATCCAGTCAATCCG TTTAGCGTTCAAATCGTGGGATAGCTTGTTGGC CCAAGCTGTTCC ATGGATAGCTTGTTGGTGTCAAGCT    CCATG ACAGCTTGA GC  TCAAGCTGTCC      TTTATTA  TTTTT      TTTTTAGTG AC    TGT AC AGTG   TT   G AT  AGCT TGA T                                          
                A                                             C                                 A            -                         ATCC     G         C  CA           ACTAAT       AT     -TTCTC         -  AACG   G  A    ---  ATG G  --    -   - TCCGTCAAGCTATACACGGACGCTCGTGACATCGTAGTGACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End