SE2620278

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7246
  • Oryza sativa
  • SE2620278
  • Mutator
  • M45
  • Chr01:25370290-25370794
  • GGAAAAAGT
  • GGAAAAAGTCGAAATACCACCCTAAACTTTAGATGGAAGTCCGTCTAGTACCCTGAACTTTAAAACCGGACATCCAACCCCTTGAACTTTATCATACC

Secondary structure and sequence

TSD    TIR
5'



3'
          G     C A  -                    C         C         A           C   C  C           C     ATCC    T                  AG   A       GCATAT     AAACTT    GAACAGTTTTGAATAACTAATATAACATATTTTCATATCATCAATTTATCCTTATATAATGATATCATACTATTATTATATGTTGGTACTTTTTTA
GGAAAAAGTC AAATA C CC CTAAACTTTAGATGGAAGTC GTCTAGTAC CTGAACTTT AAACCGGACAT CAA CC TTGAACTTTAT ATACC    ATAT ATCCCCTAAGGTGGTTTT  ATG TGGTTTT      TTTAG      AAAC                                                                                                
|||||||||| ||||| | || |||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| || ||||||||||| |||||    |||| ||||||||||||||||||  ||| |||||||      |||||      ||||                                                                                                T
CCTTTTTTAG TTTAT G GG GATTTGAAATCTACTTTCAG CAGATCGTG GACTTGAAA TTTGGCCTGTA GTT GG GATTTGAAATG TATGG    TATA TAGGGGATTCCACTAAAA  TAT ACCAAAA      AGATC      ATAT                                                                                                
          A     T -  A                    A         A         C           A   A  C           T     CAAA    T                  CG   C       ----AT     --AAAA    ATTCAACCTACTCAAACTAGTGTATAGTATGTAAAACCTGTATATATAATTTTAAAACTGAATTTAGAAAGAAAAAGAGGAATAATCGAGAGCGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End