SE2620279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7247
  • Oryza sativa
  • SE2620279
  • Mutator
  • M46
  • Chr12:9867630-9868123
  • GGGGCAATT
  • GGGGCAATTTTGTTCTTGCCCCTACTTCTATGTCCAGTATTGATTTTGCTCCTGTTTTTTTTAGGGTTTTTATTTTTTGCCCTCACTTTTTTGAAACGAAT

Secondary structure and sequence

TSD    TIR
5'



3'
    C                      C      C                C        TTA        AT        CTC        G        AAGCA      CCC                                   -   TA       C  T  T               -   G      CAT   AACTT     --TTT    -----C      TGGCAAACTTTTACAAAATTTTG
GGGG AATTTTGTTCTTGCCCCTACTT TATGTC AGTATTGATTTTGCTC TGTTTTTT   GGGTTTTT  TTTTTGCC   ACTTTTTT AAACGAAT     GTTTGC   TGTTCCGTTAATTTTTGCTAACGGTGTTAAATGTG GGG  AAAAGGA AA TA ACCCTTAGATATTTT CCG TACTTT   ACA     TCAAA     GACC      AAATTT                       
|||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||   ||||||||  ||||||||   |||||||| ||||||||     ||||||   ||||||||||||||||||||||||||||||||||| |||  ||||||| || || ||||||||||||||| ||| ||||||   |||     |||||     ||||      ||||||                        
CCCT TTAAAGCAAGAATGGGGATGAA GTACAG TTATAATTAAAACGGG ATAAAAAA   TCCAAAAG  AAAAATGG   TGAAAAAA TTTGCTTA     CAAATG   ACAAGGCAATTAAGAACGATTGCCACAATTTACAC CCC  TTTTTCT TT AT TGGGAATTTATAAAA GGC ATGAAA   TGT     AGTTT     CTGG      ACGGTA                       
    A                      A      A                T        ---        -C        -AA        A        GTTAG      AAA                                   T   TA       A  C  T               A   -      -AC   --ATT     TATGT    ATAACT      AAATATCGTCATTAAAATAAACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End