SE2620281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7249
  • Oryza sativa
  • SE2620281
  • Mutator
  • M48
  • Chr03:22407895-22408582
  • GGGAAAATT
  • GGGAAAATTATAAAAACCACCCCAAATATCACTTCAAGTTTGGGATGCCCCCCTATAAGAAGATTTGTTGCAAATCCCCACCTCCTAATTCACTTTGGTTTGATTTAGGCACCTTCCCTCTGCACTGCGTGATTCCTAGAGCATCTCGTGGTGAAATTAGCTAAGTCCCGCTCATCGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
         A            C    A     TCA             C     T                                    -   --                     C        -  C         A   C                  C            AT  T  T   --   TCAACAAGTTCCTTTTGCATTAGATTGTGTGGCCTTAATTTTTGATTAAACTGTACTGAAATCTGCTATTTTGGGCCATCTGACCAATTGCAACAGATGAAGTTATACAGTTATAATCTGGCTATATGATTACTGCTTCATGTTCAAATGTTTC
GGGAAAATT TAAAAACCACCC AAAT TCACT   AGTTTGGGATGCC CCCTA AAGAAGATTTGTTGCAAATCCCCACCTCCTAATTCA CTT  TGGTTTGATTTAGGCACCTTC CTCTGCAC TG GTGATTCCT GAG ATCTCGTGGTGAAATTAG TAAGTCCCGCTC  CG GA GAT  TTG                                                                                                                                                          
||||||||| |||||||||||| |||| |||||   ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||||||||| ||||||||||||  || || |||  |||                                                                                                                                                          T
CCCTTTTAA ATTTTTGGTGGG TTTA AGTGA   TCAAACTCTACGG GGGGT TTCTTCTAAACAACGTTTAGGGGTGGAGGATTAAGT GAA  ACCAAACTAAATCCGTGGAAG GAGGTGTG AC CACTAAGGA TTC TAGAGTACCGCTTTAGTT GTTCGGGGTGAG  GC CT CGT  TCT                                                                                                                                                          
         C            A    C     TAC             A     T                                    A   CA                     A        C  A         C   T                  A            CT  C  -   TC   AACACAACAAACAAGACATATTCTGCTAGTAAAGCAACCCAAGAGTACCGGTAAAGTATCACAAAAAGTACCATATGATCGATATATAAAGTTTGACTAAGTACACATGACTTGTTATATAAGCAAAAAAAAAAGTCCCTGCATTACTCATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End