SE2620282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7250
  • Oryza sativa
  • SE2620282
  • Mutator
  • M49
  • Chr05:29702423-29703180
  • GGGAATGTC
  • GGAATGTCTATAG

Secondary structure and sequence

TSD    TIR
5'



3'
G     GT   T  ATCAT    C      C --C     CA               T  C   CC   -       A            CAACAAAACCTTAAAAATCCTCTCTCCTCTCCCGATTCCTCACACGCCGCCGCTCCTCAGCGCTTCCCACCCGCCTCCGCCACTGTCGCCGCTGCCCCAGCGCACCACCGCCCGACCTCGCCGGCCGGCCAAAAGGTGTCAACGGCGCCGGCTAGGCCCCCCCGACCGGCCCCCTTCCCCTCCCCCTCCCTCTCCTCTCCTTTGCCTCAAGCCGGCGGTGGCGAGCTGTCCGTCGTCTTCCCTGTTGCCGGCGGCGGGGCGCCACCACCGGCCGCTTCCTCCTACCACTTT
 GGAAT  CTA AG     TTGA AGAAAA C   CCTCA  AATCTTGTAAATTTT GA CAC  GAT TGCTTTA GATTCGTGCAGG                                                                                                                                                                                                                                                                                                   
 |||||  ||| ||     |||| |||||| |   |||||  ||||||||||||||| || |||  ||| ||||||| ||||||||||||                                                                                                                                                                                                                                                                                                   T
 CCTTA  GAT TC     AGCT TCTTTT G   GGAGT  TTAGAACGTTTAAAA CT GTG  CTA ACGAAGT CTAAGCACGAGA                                                                                                                                                                                                                                                                                                   
G     AC   T  GATAC    A      A TAT     --               C  A   AC   C       G            AGAGGTTGAGGCCGCTGGTGGAGAAGAAGAGGTTACGGTCGCTTGGGTTTGAGACCATCTCCCGGCTGCTTAATCCAGGGCCCCACCCCACCCCCACCCCCACCCCCACCCCCCCCCTTATCCCTTCTCCTCCCCCCCTCAAGCGGCCGAAATCTCCCTACCGGCACCCTCCGCCGTTGGGCCGCCACCCGCCACCTAGCTCGCCCGCCGCTCCGCCGCCGCCGCCGCCGCGGCTTCGGCGCCCCGACCTCCTGCCGCTGCCCGGCCACATCCGCCGCCCCCGTTTCGCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End