SE2620283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7251
  • Oryza sativa
  • SE2620283
  • Mutator
  • M50
  • Chr07:24980278-24980641
  • GAGTAAACT
  • GAGTAAACTTCTCTTCGGGCTACCTTTTGTTACCGATGTTTCACTTTGGACCACCCTTTAAGCAATATTTTCACTTTGGACTGGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A  C  CT   C                          A            C  TAA  -   A                    AACC       T                -  CG     -CTTC   AGCATATAA    --- CTCCATTACATCGTCTCATACTCGTCAATGAGCTGCCAC
GAGT AA TT  CTT GGGCTACCTTTTGTTACCGATGTTTC CTTTGGACCACC TT   GC AAT TTTTCACTTTGGACTGGGTA    TGCCTTT GTTTCACTTTGGACCA CC  ACTCT     TCA         ACGA   T                                       
|||| || ||  ||| |||||||||||||||||||||||||| |||||||||||| ||   || ||| ||||||||||||||||||||    ||||||| |||||||||||||||| ||  |||||     |||         ||||   |                                        
CTCA TT AA  GAA CCCGGTGGAAAATAATGGCTACAAAG GAAACCTGGTGG AA   TG TTA AAAAGTGAAACCTGGCCTAT    ATGGAAA TAAAGTGAAACCTGGT GG  TGAGA     AGT         GATG   G                                       
    A  A  AT   A                          C            -  TCC  A   C                    AAAA       -                T  AA     AAATA   --------A    TAG TTGAACATTATACAACTTCTTTATCAGAATGTATATCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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