SE2620284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7252
  • Oryza sativa
  • SE2620284
  • Mutator
  • M50
  • Chr07:15895498-15896261
  • GAGTAAATT
  • GAGTAAATTGCATCTTGGGCTATTTTTTCTTACCTGTGTTGTAACTTGGACCAGTGAAAAAGTAAACTTTTCACTTTGGACCGGGTATGTTTACA

Secondary structure and sequence

TSD    TIR
5'



3'
    A                      TC     TG        C      C  T AA     -                A        G      CAAA          A                         C   T                 -------GTACA    -  GGTCTCTTTCTCGATCAGGTGTAGTGCATGAAAAGGCAAGAAGCAAAACCCTTCACAGGGTAGCCACCCGCCAAAGTTGATTTCGAGCTCAAATGCAGGCGGCACTACGAAGGCGGAGCTTGAGCGCTGCAAAACTTGTTGAAGCTCGAGCGACATGTGGAAATTTAGCGCAGGCGTGCAGCATAACATGTAGCACTAGCGGAGGTCGAG
GAGT AATTGCATCTTGGGCTATTTTT  TTACC  TGTTGTAA TTGGAC AG G  AAAGT AAACTTTTCACTTTGG CCGGGTAT TTTACA    GTTTCAATTT GACTCTCTTCTTCTTCCTCCAGCTC CTT CTTCCTCTCTTTTCTTT            GCTC AA                                                                                                                                                                                                                  
|||| ||||||||||||||||||||||  |||||  |||||||| |||||| || |  ||||| |||||||||||||||| |||||||| ||||||    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||            |||| ||                                                                                                                                                                                                                  C
CTCA TTAACGTGGAACTCGGTGGAAA  AATGG  ACAATGTT AACCTG TC C  TTTCG TTTGAAAAGTGAAACC GGTCTATA AAATGT    CAAAGTTAAA CTGAGGGAAGAAGAAGGAGGTTGAG GAA GGGGGAGAGAGGGGAAG            GAAG TT                                                                                                                                                                                                                  
    C                      CT     TA        A      A  - AA     G                C        G      ACTA          C                         A   -                 TTAGACATTTCA    G  TCTTAAGTTTCCCATCAAACGTAAAAGTTAGTAGCTGATGGATCACGAACACCGAATTAAAGTTCCTGTCGCCTCCCACGTGTTGTTCATAAGGATGACCATCGTTGATCGTATGCTTCTTCGACCGGCCGTTACTGTCTGTCAACGACGATGAAAGACTTGACTGCTATTCTTGATTCAGTTCATCGTCTATCGGTGCGAGTTCGAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End