SE2620285

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7253
  • Oryza sativa
  • SE2620285
  • Mutator
  • M51
  • Chr08:10689424-10690017
  • GAGTAAATT
  • GAGTAAATTTTACTTTGGACCATATTTATTGACCAAAATTTTACATTGGGTTAGGGCTAGACTCATGTTTTCGCTTAACACCACGTATAATTACCGTTCTTTGAACTTTGGACC

Secondary structure and sequence

TSD    TIR
5'



3'
                  ---   ATA      G      A                  C      C                   C     A        C    A          TGATTTTATA     C  -  CACGAG    TA   AG -    T    TTTTACAAGAAACAATGATATGGAAATTTTTGCCATGCAAATATGCTTAGCACAAGAACAATGATGTAACATGTTACAGGATATCCTATCAGATTAATGGGACTTCATTACTACTACATATGAACATTCACAACCCTTATACT
GAGTAAATTTTACTTTGG   ACC   TTTATT ACCAAA TTTTACATTGGGTTAGGG TAGACT ATGTTTTCGCTTAACACCA GTATA TTACCGTT TTTG ACTTTGGACC          GTTAC AT CA      TTGT  TCT  G TGCT AGCA                                                                                                                                               
||||||||||||||||||   |||   |||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||| |||| ||||||||||          ||||| || ||      ||||  |||  | |||| ||||                                                                                                                                               A
CTCATTTAAAGTGAAACC   TGG   AAATAA TGGTTT AAAGTGTAACCTGATCTT ATCTGA TATAAAAGTGAATTGTGGT TATAT AATGGTAG AAAC TGAAACCTGG          AAGTG TT AA      TGTG  TAT  C TATT CTAG                                                                                                                                               
                  AGT   ---      A      A                  A      A                   A     C        T    G          ------CCCA     -  T  ------    --   -- A    A    CATCTCGACTAGAGTAAAGAAAAAACACAATCTTTTGAATCTTAAGTTGTTAAACATGATTGTGATGTCAACCCAAACATTTTGTACATTATAGAAAAGATTTTTTTATCAAGAATTTGAGTTATAAAGAGGTTAAAACAGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End