SE2620286

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7254
  • Oryza sativa
  • SE2620286
  • Mutator
  • M9
  • Chr06:8627963-8628545
  • GGGAGAATA
  • GGGAGAATAGTCTATTTGGTCCTTTAACTTTCGTTCTAAGGTCAATATGGTCCTTGATATTTCATTTTGTTCGAACTGATCCTCAAAGTCTATC

Secondary structure and sequence

TSD    TIR
5'



3'
                        T  C       C                          C           A T      C   G CTA  TTTCA     C     T     -A      A         C             C            ACAAATC     T  AATGCCTAATATACCCTTACATACAACATAAGAGAGAAAAAAGAAAAAGGAAAAATATCATACACACTTACATTCGTAAATACTCAAATATATCGATTTGTCTATCAATACATGTAAC
GGGAGAATAGTCTATTTGGTCCTT AA TTTCGTT TAAGGTCAATATGGTCCTTGATATTT ATTTTGTTCGA C GATCCT AAA T   TC     GTCTA TATGG CCTTG  CCCACC AAAACGCCA GTAGGCATGCCAT TCATCATCTTAT       TCCCA GG                                                                                                                      
|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| ||| |   ||     ||||| ||||| |||||  |||||| ||||||||| ||||||||||||| ||||||||||||       ||||| ||                                                                                                                      A
CCCTCTTATCGGGTAAACCAGGGA TT AAAGCGG ATTCCAGTTATACCAGGAACTATAAA TAAGATAGGTT G CTAGGA TTT A   AG     CAGGT ATACT GGAAT  GGGTGG TTTTGCGGT CATCTGTACGGTA AGTAGTAGAATA       TTTAC CT                                                                                                                      
                        T  C       A                          A           A T      A   G AAC  TATAC     T     T     CC      A         A             C            ----ATT     -  ACCACTTTATAGAATAAACAGGTAAACATACATTATGCTTTATGACACTGATTAATTAGGATATTCTAATCTATTAATTTATATTAGGGTCCTTAACTAAATATGTTTTTTAACTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End